Detailed information of SNP:
|
SNP ID:
sf1125382962(Gbrowse)
Chromosome: chr11 Position: 25382962 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.23% | 34.77% |
| All Indica | 798 | 78.07% | 21.93% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 62.83% | 37.17% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 22.39% | 77.61% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125382962 | T->C | INTERGENIC | None |