Detailed information of SNP:
|
SNP ID:
sf1125384584(Gbrowse)
Chromosome: chr11 Position: 25384584 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 70.37% | 29.63% |
| All Indica | 785 | 59.24% | 40.76% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 367 | 81.47% | 18.53% |
| Indica II | 209 | 33.97% | 66.03% |
| Indica Intermediate | 209 | 45.45% | 54.55% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125384584 | G->A | INTERGENIC | None |