Detailed information of SNP:
|
SNP ID:
sf1125388312(Gbrowse)
Chromosome: chr11 Position: 25388312 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.76% | 35.24% |
| All Indica | 795 | 50.19% | 49.81% |
| All Japonica | 495 | 88.08% | 11.92% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 42.78% | 57.22% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 333 | 89.19% | 10.81% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125388312 | C->T | INTERGENIC | None |