Detailed information of SNP:
|
SNP ID:
sf1125394699(Gbrowse)
Chromosome: chr11 Position: 25394699 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 56.84% | 43.16% |
| All Indica | 791 | 41.59% | 58.41% |
| All Japonica | 482 | 82.57% | 17.43% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 375 | 40.53% | 59.47% |
| Indica II | 209 | 49.28% | 50.72% |
| Indica Intermediate | 207 | 35.75% | 64.25% |
| Temperate Japonica | 330 | 83.94% | 16.06% |
| Tropical Japonica | 87 | 73.56% | 26.44% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125394699 | C->T | LOC_Os11g42910(LOC_Os11g42910.1) | Non-Synonymous SNP |