Detailed information of SNP:
|
SNP ID:
sf1125397696(Gbrowse)
Chromosome: chr11 Position: 25397696 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 64.99% | 35.01% |
| All Indica | 799 | 48.44% | 51.56% |
| All Japonica | 490 | 91.63% | 8.37% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 41.33% | 58.67% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 328 | 92.68% | 7.32% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125397696 | G->A | LOC_Os11g42910(LOC_Os11g42910.1) | Non-Synonymous SNP |