Detailed information of SNP:
|
SNP ID:
sf1125397771(Gbrowse)
Chromosome: chr11 Position: 25397771 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.22% | 37.78% |
| All Indica | 799 | 47.68% | 52.32% |
| All Japonica | 494 | 85.43% | 14.57% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 332 | 84.94% | 15.06% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125397771 | A->G | LOC_Os11g42910(LOC_Os11g42910.1) | Non-Synonymous SNP |