Detailed information of SNP:
|
SNP ID:
sf1125401216(Gbrowse)
Chromosome: chr11 Position: 25401216 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 68.50% | 31.50% |
| All Indica | 790 | 78.10% | 21.90% |
| All Japonica | 487 | 50.10% | 49.90% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 63.64% | 36.36% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 332 | 35.84% | 64.16% |
| Tropical Japonica | 89 | 93.26% | 6.74% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125401216 | T->C | INTERGENIC | None |