Detailed information of SNP:
|
SNP ID:
sf1125405623(Gbrowse)
Chromosome: chr11 Position: 25405623 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 79.27% | 20.73% |
| All Indica | 790 | 70.38% | 29.62% |
| All Japonica | 493 | 95.13% | 4.87% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 208 | 79.33% | 20.67% |
| Indica Intermediate | 207 | 50.24% | 49.76% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125405623 | G->C | INTERGENIC | None |