Detailed information of SNP:
|
SNP ID:
sf1125408558(Gbrowse)
Chromosome: chr11 Position: 25408558 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 77.56% | 22.44% |
| All Indica | 791 | 68.14% | 31.86% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 207 | 74.40% | 25.60% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125408558 | C->T | LOC_Os11g42920(LOC_Os11g42920.1) | INTRON |