Detailed information of SNP:
|
SNP ID:
sf1125409206(Gbrowse)
Chromosome: chr11 Position: 25409206 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 67.40% | 32.60% |
| All Indica | 791 | 76.74% | 23.26% |
| All Japonica | 492 | 49.19% | 50.81% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 63.90% | 36.10% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125409206 | A->C | LOC_Os11g42920(LOC_Os11g42920.1) | INTRON |