Detailed information of SNP:
|
SNP ID:
sf1125410362(Gbrowse)
Chromosome: chr11 Position: 25410362 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 75.23% | 24.77% |
| All Indica | 794 | 68.64% | 31.36% |
| All Japonica | 489 | 86.71% | 13.29% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 210 | 77.14% | 22.86% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 332 | 90.96% | 9.04% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125410362 | A->G | INTERGENIC | None |