Detailed information of SNP:
|
SNP ID:
sf1125410431(Gbrowse)
Chromosome: chr11 Position: 25410431 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 61.09% | 38.91% |
| All Indica | 784 | 48.21% | 51.79% |
| All Japonica | 477 | 82.18% | 17.82% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 367 | 41.96% | 58.04% |
| Indica II | 209 | 64.59% | 35.41% |
| Indica Intermediate | 208 | 42.79% | 57.21% |
| Temperate Japonica | 327 | 87.46% | 12.54% |
| Tropical Japonica | 89 | 64.04% | 35.96% |
| Japonica Intermediate | 61 | 80.33% | 19.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125410431 | G->A | INTERGENIC | None |