Detailed information of SNP:
|
SNP ID:
sf1125412144(Gbrowse)
Chromosome: chr11 Position: 25412144 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.12% | 35.88% |
| All Indica | 798 | 48.25% | 51.75% |
| All Japonica | 495 | 89.09% | 10.91% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 41.98% | 58.02% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125412144 | C->T | LOC_Os11g42930(LOC_Os11g42930.1) | INTRON |