Detailed information of SNP:
|
SNP ID:
sf1125415089(Gbrowse)
Chromosome: chr11 Position: 25415089 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 66.71% | 33.29% |
| All Indica | 797 | 55.71% | 44.29% |
| All Japonica | 495 | 83.03% | 16.97% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 373 | 46.11% | 53.89% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 333 | 78.38% | 21.62% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125415089 | T->C | LOC_Os11g42930(LOC_Os11g42930.1) | INTRON |