Detailed information of SNP:
|
SNP ID:
sf1125418979(Gbrowse)
Chromosome: chr11 Position: 25418979 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.44% | 28.56% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 497 | 55.73% | 44.27% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 63.47% | 36.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 41.49% | 58.51% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125418979 | T->C | INTERGENIC | None |