Detailed information of SNP:
|
SNP ID:
sf1125419031(Gbrowse)
Chromosome: chr11 Position: 25419031 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.34% | 35.66% |
| All Indica | 797 | 68.88% | 31.12% |
| All Japonica | 497 | 55.73% | 44.27% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 211 | 64.45% | 35.55% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 41.49% | 58.51% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125419031 | T->C | INTERGENIC | None |