Detailed information of SNP:
|
SNP ID:
sf1125422881(Gbrowse)
Chromosome: chr11 Position: 25422881 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.15% | 37.85% |
| All Indica | 796 | 59.80% | 40.20% |
| All Japonica | 497 | 61.97% | 38.03% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 50.67% | 49.33% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125422881 | G->A | INTERGENIC | None |