Detailed information of SNP:
|
SNP ID:
sf1125423682(Gbrowse)
Chromosome: chr11 Position: 25423682 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.67% | 24.33% |
| All Indica | 799 | 82.60% | 17.40% |
| All Japonica | 497 | 62.98% | 37.02% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125423682 | C->T | INTERGENIC | None |