Detailed information of SNP:
|
SNP ID:
sf1125423912(Gbrowse)
Chromosome: chr11 Position: 25423912 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.81% | 24.19% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 497 | 62.98% | 37.02% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125423912 | G->A | INTERGENIC | None |