Detailed information of SNP:
|
SNP ID:
sf1125427263(Gbrowse)
Chromosome: chr11 Position: 25427263 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.55% | 41.45% |
| All Indica | 797 | 54.08% | 45.92% |
| All Japonica | 496 | 61.49% | 38.51% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125427263 | A->G | INTERGENIC | None |