Detailed information of SNP:
|
SNP ID:
sf1125431392(Gbrowse)
Chromosome: chr11 Position: 25431392 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.88% | 35.12% |
| All Indica | 796 | 46.23% | 53.77% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 373 | 53.89% | 46.11% |
| Indica II | 212 | 25.00% | 75.00% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125431392 | G->A | INTERGENIC | None |