Detailed information of SNP:
|
SNP ID:
sf1125431413(Gbrowse)
Chromosome: chr11 Position: 25431413 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 87.55% | 12.45% |
| All Indica | 796 | 79.52% | 20.48% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 373 | 67.02% | 32.98% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125431413 | G->A | INTERGENIC | None |