Detailed information of SNP:
|
SNP ID:
sf1125435051(Gbrowse)
Chromosome: chr11 Position: 25435051 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.00% | 14.00% |
| All Indica | 795 | 78.36% | 21.64% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 72.31% | 27.69% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125435051 | G->A | INTERGENIC | None |