Detailed information of SNP:
|
SNP ID:
sf1125435838(Gbrowse)
Chromosome: chr11 Position: 25435838 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 90.39% | 9.61% |
| All Indica | 775 | 84.65% | 15.35% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 74.72% | 25.28% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125435838 | C->T | INTERGENIC | None |