Detailed information of SNP:
|
SNP ID:
sf1125439419(Gbrowse)
Chromosome: chr11 Position: 25439419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 86.11% | 13.89% |
| All Indica | 798 | 79.70% | 20.30% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125439419 | C->T | LOC_Os11g42980(LOC_Os11g42980.1) | Synonymous |