Detailed information of SNP:
|
SNP ID:
sf1125449114(Gbrowse)
Chromosome: chr11 Position: 25449114 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.36% | 15.64% |
| All Indica | 799 | 78.72% | 21.28% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125449114 | G->A | INTERGENIC | None |