Detailed information of SNP:
|
SNP ID:
sf1125460647(Gbrowse)
Chromosome: chr11 Position: 25460647 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.40% | 15.60% |
| All Indica | 799 | 78.60% | 21.40% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125460647 | C->A | INTERGENIC | None |