Detailed information of SNP:
|
SNP ID:
sf1125472397(Gbrowse)
Chromosome: chr11 Position: 25472397 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 84.72% | 15.28% |
| All Indica | 796 | 76.88% | 23.12% |
| All Japonica | 495 | 95.35% | 4.65% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 67.20% | 32.80% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125472397 | G->A | INTERGENIC | None |