Detailed information of SNP:
|
SNP ID:
sf1125473893(Gbrowse)
Chromosome: chr11 Position: 25473893 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.09% | 47.91% |
| All Indica | 796 | 59.80% | 40.20% |
| All Japonica | 494 | 34.21% | 65.79% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 208 | 54.33% | 45.67% |
| Temperate Japonica | 334 | 17.07% | 82.93% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125473893 | A->G | LOC_Os11g43030(LOC_Os11g43030.1) | INTRON |