Detailed information of SNP:
SNP ID:
sf1125482560(Gbrowse)
Chromosome: chr11 Position: 25482560 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 96.19% | 3.81% |
All Indica | 799 | 97.62% | 2.38% |
All Japonica | 496 | 93.15% | 6.85% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 94.31% | 5.69% |
Temperate Japonica | 335 | 91.94% | 8.06% |
Tropical Japonica | 93 | 98.92% | 1.08% |
Japonica Intermediate | 68 | 91.18% | 8.82% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1125482560 | G->A | INTERGENIC | None |