Detailed information of SNP:



SNP ID: sf1125482560(Gbrowse)

Chromosome: chr11

Position: 25482560
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 96.19% 3.81%
All Indica799 97.62% 2.38%
All Japonica496 93.15% 6.85%
Aus67 98.51% 1.49%
Indica I375 98.93% 1.07%
Indica II213 98.59% 1.41%
Indica Intermediate211 94.31% 5.69%
Temperate Japonica335 91.94% 8.06%
Tropical Japonica93 98.92% 1.08%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1125482560 G->A INTERGENIC None