Detailed information of SNP:
|
SNP ID:
sf1125489251(Gbrowse)
Chromosome: chr11 Position: 25489251 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 65.89% | 34.11% |
| All Indica | 793 | 47.92% | 52.08% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 211 | 29.86% | 70.14% |
| Indica Intermediate | 207 | 58.45% | 41.55% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125489251 | A->G | INTERGENIC | None |