Detailed information of SNP:
|
SNP ID:
sf1125493410(Gbrowse)
Chromosome: chr11 Position: 25493410 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 65.84% | 34.16% |
| All Indica | 794 | 49.75% | 50.25% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 372 | 53.23% | 46.77% |
| Indica II | 212 | 32.08% | 67.92% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125493410 | T->C | INTERGENIC | None |