Detailed information of SNP:
|
SNP ID:
sf1125558638(Gbrowse)
Chromosome: chr11 Position: 25558638 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.81% | 33.19% |
| All Indica | 796 | 50.50% | 49.50% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 211 | 59.24% | 40.76% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125558638 | A->T | LOC_Os11g43140(LOC_Os11g43140.1) | Non-Synonymous SNP |