Detailed information of SNP:
|
SNP ID:
sf1125559301(Gbrowse)
Chromosome: chr11 Position: 25559301 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 50.64% | 49.36% |
| All Indica | 796 | 65.58% | 34.42% |
| All Japonica | 493 | 24.95% | 75.05% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 209 | 53.59% | 46.41% |
| Temperate Japonica | 331 | 3.93% | 96.07% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125559301 | T->G | LOC_Os11g43140(LOC_Os11g43140.1) | Non-Synonymous SNP |