Detailed information of SNP:
|
SNP ID:
sf1125570505(Gbrowse)
Chromosome: chr11 Position: 25570505 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 93.21% | 6.79% |
| All Indica | 789 | 96.07% | 3.93% |
| All Japonica | 435 | 86.90% | 13.10% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 282 | 84.40% | 15.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125570505 | G->A | LOC_Os11g43150(LOC_Os11g43150.1) | Non-Synonymous SNP |