Detailed information of SNP:
|
SNP ID:
sf1125574378(Gbrowse)
Chromosome: chr11 Position: 25574378 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.93% | 33.07% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 36.02% | 63.98% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 19.10% | 80.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125574378 | A->G | INTERGENIC | None |