Detailed information of SNP:
|
SNP ID:
sf1125576978(Gbrowse)
Chromosome: chr11 Position: 25576978 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.54% | 47.46% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125576978 | G->A | INTERGENIC | None |