Detailed information of SNP:
|
SNP ID:
sf1125582656(Gbrowse)
Chromosome: chr11 Position: 25582656 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 96.08% | 3.92% |
| All Indica | 783 | 93.74% | 6.26% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125582656 | G->A | INTERGENIC | None |