Detailed information of SNP:
|
SNP ID:
sf1125603251(Gbrowse)
Chromosome: chr11 Position: 25603251 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.49% | 15.51% |
| All Indica | 798 | 83.33% | 16.67% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125603251 | G->C | INTERGENIC | None |