Detailed information of SNP:
|
SNP ID:
sf1125619425(Gbrowse)
Chromosome: chr11 Position: 25619425 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 50.71% | 49.29% |
| All Indica | 792 | 26.26% | 73.74% |
| All Japonica | 495 | 92.32% | 7.68% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 371 | 23.18% | 76.82% |
| Indica II | 212 | 34.43% | 65.57% |
| Indica Intermediate | 209 | 23.44% | 76.56% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125619425 | C->T | LOC_Os11g43250(LOC_Os11g43250.1) | Non-Synonymous SNP |