Detailed information of SNP:
|
SNP ID:
sf1125623178(Gbrowse)
Chromosome: chr11 Position: 25623178 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 84.09% | 15.91% |
| All Indica | 795 | 90.94% | 9.06% |
| All Japonica | 497 | 74.25% | 25.75% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125623178 | C->T | INTERGENIC | None |