Detailed information of SNP:
|
SNP ID:
sf1125630575(Gbrowse)
Chromosome: chr11 Position: 25630575 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 85.05% | 14.95% |
| All Indica | 794 | 88.54% | 11.46% |
| All Japonica | 495 | 81.82% | 18.18% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125630575 | T->C | LOC_Os11g43260(LOC_Os11g43260.1) | INTRON |