Detailed information of SNP:
|
SNP ID:
sf1125633240(Gbrowse)
Chromosome: chr11 Position: 25633240 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 93.44% | 6.56% |
| All Indica | 790 | 93.16% | 6.84% |
| All Japonica | 490 | 95.10% | 4.90% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125633240 | T->C | INTERGENIC | None |