Detailed information of SNP:
|
SNP ID:
sf1125638362(Gbrowse)
Chromosome: chr11 Position: 25638362 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 83.40% | 16.60% |
| All Indica | 790 | 86.71% | 13.29% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 370 | 90.00% | 10.00% |
| Indica II | 209 | 76.56% | 23.44% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125638362 | C->A | INTERGENIC | None |