Detailed information of SNP:
|
SNP ID:
sf1125645917(Gbrowse)
Chromosome: chr11 Position: 25645917 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 72.22% | 27.78% |
| All Indica | 794 | 95.47% | 4.53% |
| All Japonica | 494 | 31.38% | 68.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 333 | 16.22% | 83.78% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125645917 | A->G | LOC_Os11g43290(LOC_Os11g43290.1) | Non-Synonymous SNP |