Detailed information of SNP:
|
SNP ID:
sf1125645953(Gbrowse)
Chromosome: chr11 Position: 25645953 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 66.67% | 33.33% |
| All Indica | 795 | 87.04% | 12.96% |
| All Japonica | 484 | 29.13% | 70.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 85.22% | 14.78% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 333 | 15.32% | 84.68% |
| Tropical Japonica | 88 | 78.41% | 21.59% |
| Japonica Intermediate | 63 | 33.33% | 66.67% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125645953 | T->G | LOC_Os11g43290(LOC_Os11g43290.1) | Non-Synonymous SNP |