Detailed information of SNP:
|
SNP ID:
sf1125662134(Gbrowse)
Chromosome: chr11 Position: 25662134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 76.03% | 23.97% |
| All Indica | 761 | 74.90% | 25.10% |
| All Japonica | 494 | 80.36% | 19.64% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 359 | 71.31% | 28.69% |
| Indica II | 196 | 75.00% | 25.00% |
| Indica Intermediate | 206 | 81.07% | 18.93% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 91 | 49.45% | 50.55% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125662134 | T->C | INTERGENIC | None |