Detailed information of SNP:
|
SNP ID:
sf1125700116(Gbrowse)
Chromosome: chr11 Position: 25700116 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 75.18% | 24.82% |
| All Indica | 795 | 92.08% | 7.92% |
| All Japonica | 497 | 46.48% | 53.52% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125700116 | C->A | INTERGENIC | None |