Detailed information of SNP:
|
SNP ID:
sf1125708398(Gbrowse)
Chromosome: chr11 Position: 25708398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 69.42% | 30.58% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 495 | 29.70% | 70.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 333 | 25.23% | 74.77% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125708398 | C->T | INTERGENIC | None |