Detailed information of SNP:
|
SNP ID:
sf1125708410(Gbrowse)
Chromosome: chr11 Position: 25708410 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 59.06% | 40.94% |
| All Indica | 776 | 77.45% | 22.55% |
| All Japonica | 495 | 28.08% | 71.92% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 366 | 74.32% | 25.68% |
| Indica II | 207 | 82.13% | 17.87% |
| Indica Intermediate | 203 | 78.33% | 21.67% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125708410 | T->C | INTERGENIC | None |